PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K01176.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 259aa    MW: 28493.8 Da    PI: 7.634
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K01176.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB128.91.8e-4064155293
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       r+ ++++ ian++rim++vlPanaki+++ake ++ec+sefi f+t+ea+ +c+r+ r+t++++d+l a+atlGf+dy+epl+++l+k+r  
  Migut.K01176.1.p  64 RDANQYMSIANITRIMRRVLPANAKIANNAKEAIEECISEFIRFITAEANARCHRDYRNTVTPEDVLAAMATLGFDDYLEPLTIFLNKHRAQ 155
                       7899*************************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-3957166IPR009072Histone-fold
SuperFamilySSF471139.35E-3169168IPR009072Histone-fold
PfamPF008083.5E-1872133IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-1397115No hitNo description
PRINTSPR006152.6E-13116134No hitNo description
PRINTSPR006152.6E-13135153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MERGRSSNIE HKHTRRARTS GIVIREEGAP AAATTATTNA VYNLAPLNAG DGEVNQQQQQ  60
AFKRDANQYM SIANITRIMR RVLPANAKIA NNAKEAIEEC ISEFIRFITA EANARCHRDY  120
RNTVTPEDVL AAMATLGFDD YLEPLTIFLN KHRAQQNPER GSMNQLPQFV RRDRTIDGGS  180
SGFVHHQQQQ GAQMVQSPPP PTATPTVGYY VPLPPPPSAT VEEEEKLGGL TKFINDYMLR  240
NHGGGGQGSS RGCDFDPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A8e-3264153392NF-YB
4awl_B1e-3164153493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-3164153493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846005.19e-99PREDICTED: nuclear transcription factor Y subunit B-8-like
TrEMBLA0A022QDF81e-178A0A022QDF8_ERYGU; Uncharacterized protein (Fragment)
STRINGVIT_19s0015g00580.t014e-39(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6044436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.17e-32NF-YB family protein